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Optimization of protocols for DNA extraction from fecal samples

High-throughput sequencing offers new possibilities in molecular ecology and conservation studies. However, its potential has not yet become fully exploited for noninvasive studies of free–ranging animals, such as those based on feces. High–throughput sequencing allows sequencing of short DNA fragments and could allow simultaneous genotyping of a very large number of samples and markers at a low cost. The application of high throughput genotyping to fecal samples from wildlife has been hindered by several labor intensive steps. Alternative protocols which could allow higher throughput were evaluated for two of these steps: sample collection and DNA extraction. Two different field sampling and seven different DNA extraction methods were tested on grey wolf (Canis lupus) feces. There was high variation in genotyping success rates. The field sampling method based on surface swabbing performed much worse than the extraction from a fecal fragment. In addition, there is a lot of room for improvement in the DNA extraction step. Optimization of protocols can lead to very much more efficient, cheaper and higher throughput noninvasive monitoring. Selection of appropriate markers is still of paramount importance to increase genotyping success. informacion[at]ebd.csic.es: Sarabia et al (2020) Towards high-throughput analyses of fecal samples from wildlife. Animal Biodiver Conserv 43.2: 271–283 Doi 10.32800/abc.2020.43.0271


http://abc.museucienciesjournals.cat/volum-43-2-2020/towards-high-throughput-analyses-of-fecal-samples-from-wildlife/?lang=en
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The roles of raptors in a changing world

The roles of raptors in a changing world

Birds of prey have been, in comparison to other avian groups, an uncommon study model, mainly due to the limitations imposed by their conservative life strategy. Nonetheless, they have attracted a strong interest from the point of view of conservation biology because many populations have been close to extinction and because of their recognised role in ecosystems as top predators and scavengers and as flagship species. Today, after more than a century of persecution, and with the exception of some vultures still very much affected by illegal poisoning, many populations of birds of prey have experienced significant recoveries in many regions of Spain and the European Mediterranean. These changes pose new challenges when addressing the conservation of raptors in the coming decades. On this basis, and from a preferentially Mediterranean perspective, attention is focused on the need of describing and quantifying the role of these birds as providers of both regulating and cultural ecosystem services. Moreover, persisting conflicts are revisited with human interests and call attention to the emergence of new conflicts with a strong social and media component such as the predation on live cattle by vultures. Also, the rampant humanization of the environment determines the need for new solutions to the growing, yet scarcely explored, problem of accidents in new infrastructures such as mortality in wind farms. Finally, it is explored in depth the ecological response of birds of prey to large-scale habitat changes such as urbanisation and abandonment of marginal lands that are also expected to increase in the near future. More scientific knowledge is urgently needed to provide adequate responses to the challenge of keeping healthy populations of avian predators and scavengers in a rapidly changing world. informacion[at]ebd.csic.es: Donázar et al (2016) Roles of raptors in a changing world: from flagships to providers of key ecosystem services. Ardeola 63(1) 181-234 doi: http://dx.doi.org/10.13157/arla.63.1.2016.rp8


http://www.ardeola.org/volume/63.1/article/181-234/1686