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Optimization of protocols for DNA extraction from fecal samples

High-throughput sequencing offers new possibilities in molecular ecology and conservation studies. However, its potential has not yet become fully exploited for noninvasive studies of free–ranging animals, such as those based on feces. High–throughput sequencing allows sequencing of short DNA fragments and could allow simultaneous genotyping of a very large number of samples and markers at a low cost. The application of high throughput genotyping to fecal samples from wildlife has been hindered by several labor intensive steps. Alternative protocols which could allow higher throughput were evaluated for two of these steps: sample collection and DNA extraction. Two different field sampling and seven different DNA extraction methods were tested on grey wolf (Canis lupus) feces. There was high variation in genotyping success rates. The field sampling method based on surface swabbing performed much worse than the extraction from a fecal fragment. In addition, there is a lot of room for improvement in the DNA extraction step. Optimization of protocols can lead to very much more efficient, cheaper and higher throughput noninvasive monitoring. Selection of appropriate markers is still of paramount importance to increase genotyping success. informacion[at]ebd.csic.es: Sarabia et al (2020) Towards high-throughput analyses of fecal samples from wildlife. Animal Biodiver Conserv 43.2: 271–283 Doi 10.32800/abc.2020.43.0271


http://abc.museucienciesjournals.cat/volum-43-2-2020/towards-high-throughput-analyses-of-fecal-samples-from-wildlife/?lang=en
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Society perceives the presence of Kramer's parrot worse the more common it becomes

Society perceives the presence of Kramer's parrot worse the more common it becomes

The perceptions of the general public regarding invasive alien species (IAS) are important in the prevention of future invasions and the success of management programmes. A novel visual method was used to investigate the perception of a charismatic IAS, the rose-ringed parakeet, across different stakeholders in Seville, Spain. Respondents were asked to select images of 10 bird species they would like to have present in their surroundings, out of 20 available images, including the parakeet and three other non-natives. This makes the survey easy, fast to take and attractive to potential participants, while prior and potentially biasing information of survey goals is minimised. Although more than 95% of the respondents recognised the parakeet, at least up to family level, only 34.8% selected it. Selection rates were even lower for three other IAS and even more so when the status of non-native species was indicated next to the images, suggesting that a social norm against IAS may be established. To validate this novel visual approach, perception via a traditional questionnaire was also assessed and the results of the two survey methods coincided. Finally parakeet selection differed importantly amongst pre-defined sectors of the public and people who had prior experience with the parakeet selected it less frequently (e.g. farmers, park managers). These results highlight the importance of studying different stakeholders to get the full picture when considering IAS management programmes. This new visual survey method can thus serve as an excellent and user-friendly tool to study people's perceptions regarding charismatic IAS and facilitate well-informed and sensible decision-making. informacion[at]ebd.csic.es: Luna et al (2019) Assessment of social perception of an invasive parakeet using a novel visual survey method. NeoBiota DOI 10.3897/neobiota.42.31017


https://neobiota.pensoft.net/article/31017/