- Paper Geographical isolation versus dispersal: Relictual alpine grasshoppers support a model of interglacial diversification with limited hybridization.Molecular Ecology31(1): 296-312.DOI 10.1111/mec.16225- Ortego, J.; Knowles, L.L. - 2022 
- Master thesis Influence of geologic and climatic events on evolutionary history of flightless bush cricket from Iberian Peninsula.Universidad Internacional Menendez Pelayo (Uimp)- Trillo Gabaldón, Marina - 2021 
- Paper Genomic data support multiple introductions and explosive demographic expansions in a highly invasive aquatic insect.Molecular Ecology30(17): 4189-4203.DOI 10.1111/mec.16050- Ortego, J.; Céspedes, V.; Millán, A.; Green, A.J. - 2021 
- Paper Broadly Distributed but Genetically Fragmented: Demographic Consequences of Pleistocene Climatic Oscillations in a Common Iberian Grasshopper.Insect Systematics and Diversity5(5): 2.DOI 10.1093/isd/ixab009- Ortego, J.; Noguerales, V.; Tonzo, V.; González-Serna, M.J.; Cordero, P.J. - 2021 
- Paper Glacial connectivity and current population fragmentation in sky islands explain the contemporary distribution of genomic variation in two narrow-endemic montane grasshoppers from a biodiversity hotspot.Diversity and Distributions27(9): 1619-1633.DOI 10.1111/ddi.13306- Tonzo, V.; Ortego, J. - 2021 
- Paper Demographic consequences of dispersal-related trait shift in two recently diverged taxa of montane grasshoppers*.Evolution: international journal of organic evolution75(8): 1998-2013.DOI 10.1111/evo.14205- Ortego, J.; Gutiérrez-Rodríguez, J.; Noguerales, V. - 2021 
- Paper Genomic insights into the origin of trans-Mediterranean disjunct distributions.Journal of Biogeography48(2): 440-452.DOI 10.1111/jbi.14011- Noguerales, V.; Cordero, P.J.; Knowles, L.L.; Ortego, J. - 2021 
- Paper Paraphyletic species no more – genomic data resolve a Pleistocene radiation and validate morphological species of the Melanoplus scudderi complex (Insecta: Orthoptera).Systematic Entomology45(3): 594-605.DOI 10.1111/syen.12415- Huang, J.P.; Hill, J.V.G.; Ortego, J.; Knowles, L.L. - 2020 
- Paper Safeguarding the genetic integrity of native pollinators requires stronger regulations on commercial lines.Ecological Solutions and Evidence1(1): e12012.DOI 10.1002/2688-8319.12012- Bartomeus, I.; Molina, F.P.; Hidalgo-Galiana, A.; Ortego, J. - 2020 
- Paper Incorporating interspecific interactions into phylogeographic models: A case study with Californian oaks.Molecular Ecology29(23): 4510-4524.DOI 10.1111/mec.15548- Ortego, J.; Knowles, L.L. - 2020