Destacados
- La Fundación Jaime González-Gordon ofrece cuatro becas para el desarrollo de Trabajos de Fin de Máster sobre Doñana
- Cinco contratos para desarrollar la tesis doctoral en la Estación Biológica de Doñana - CSIC
- Actividades de la Estación Biológica de Doñana en la Noche Europea de los Investigadores
- La ICTS-RBD se prepara para la 30ª Campaña de Anillamiento de Paseriformes Migratorios en Doñana
- Inicio procedimiento nueva dirección EBD-CSIC
Noticias
Characterization of the accessible genome in the human malaria parasite Plasmodium falciparum
Human malaria is a devastating disease and a major cause of poverty in resource-limited countries. To develop and adapt within hosts Plasmodium falciparum undergoes drastic switches in gene expression. To identify regulatory regions in the parasite genome, a genome-wide profiling of chromatin accessibility was performed in two culture-adapted isogenic subclones at four developmental stages during the intraerythrocytic cycle by using the Assay for Transposase-Accessible Chromatin by sequencing (ATAC-seq). Tn5 transposase hypersensitivity sites (THSSs) localize preferentially at transcriptional start sites (TSSs). Chromatin accessibility by ATAC-seq is predictive of active transcription and of the levels of histone marks H3K9ac and H3K4me3. This assay allows the identification of novel regulatory regions including TSS and enhancer-like elements. The dynamics in the accessible chromatin profile matches temporal transcription during development. Motif analysis of stage-specific ATAC-seq sites predicts the in vivo binding sites and function of multiple ApiAP2 transcription factors. At last, the alternative expression states of some clonally variant genes (CVGs), including eba, phist, var and clag genes, associate with a differential ATAC-seq signal at their promoters. Altogether, this study identifies genome-wide regulatory regions likely to play an essential function in the developmental transitions and in CVG expression in P. falciparum. informacion[at]ebd.csic.es: Ruiz et al (2018) Characterization of the accessible genome in the human malaria parasite Plasmodium falciparum. Nucleic Acids Res https://doi.org/10.1093/nar/gky643
https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky643/5054866?guestAccessKey=c45cf7d4-f086-449f-a39e-246f7a8122fe- Laboratorio de Ecología Molecular
- Laboratorio SIG y Teledetección (LAST)
- Laboratorio de Ecología Química
- Laboratorio de Ecología Acuática
- Laboratorio de Ecofisiología
- Laboratorio de Isótopos Estables
- Unidad de Experimentación Animal
- Visita virtual
- Unidad de Seguimiento
- Laboratorio de Camaras climaticas